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  5. Solyc09g008700

Solyc09g008700


Description : E3 ubiquitin-protein ligase (AHRD V3.3 *** A0A072U2X8_MEDTR)


Gene families : OG_42_0008592 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008592_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g008700
Cluster HCCA clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G004090.6 No alias E3 ubiquitin ligase *(UPL6) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006470 protein dephosphorylation IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0017004 cytochrome complex assembly IEP Predicted GO
MF GO:0017016 Ras GTPase binding IEP Predicted GO
MF GO:0017048 Rho GTPase binding IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
MF GO:0051766 inositol trisphosphate kinase activity IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000569 HECT_dom 847 1134
No external refs found!
GO:0009987 cellular process None Extended BP GO:0016070 RNA metabolic process None Extended BP GO:0016072 rRNA metabolic process None Extended BP GO:0034470 ncRNA processing None Extended BP GO:0034641 cellular nitrogen compound metabolic process None Extended BP GO:0034660 ncRNA metabolic process None Extended BP GO:0043170 macromolecule metabolic process None Extended CC GO:0043226 organelle None Extended CC GO:0043228 non-membrane-bounded organelle None Extended CC GO:0043229 intracellular organelle None Extended CC GO:0043232 intracellular non-membrane-bounded organelle None Extended BP GO:0044237 cellular metabolic process None Extended BP GO:0044238 primary metabolic process None Extended CC GO:0044422 organelle part None Extended CC GO:0044424 intracellular part None Extended CC GO:0044428 nuclear part None Extended CC GO:0044446 intracellular organelle part None Extended CC GO:0044464 cell part None Extended BP GO:0046483 heterocycle metabolic process None Extended BP GO:0071704 organic substance metabolic process None Extended BP GO:0090304 nucleic acid metabolic process None Extended BP GO:1901360 organic cyclic compound metabolic process None Extended
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 172 207
IPR001680 WD40_repeat 221 249
IPR018983 U3_snoRNA-assocProt_15_C 383 525
No external refs found!