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  5. LOC_Os11g41260

LOC_Os11g41260


Description : snRNP protein, putative, expressed


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g41260
Cluster HCCA clusters: cluster_0076

Target Alias Description ECC score Gene Family Method Actions
270271 No alias BTB-POZ and MATH domain 4 0.01 Orthogroups_2024-Update
Bradi3g40785 No alias BTB-POZ and MATH domain 2 0.03 Orthogroups_2024-Update
Bradi3g41284 No alias BTB-POZ and MATH domain 1 0.03 Orthogroups_2024-Update
Bradi4g23836 No alias BTB-POZ and MATH domain 2 0.02 Orthogroups_2024-Update
GRMZM2G125162 No alias BTB-POZ and MATH domain 1 0.02 Orthogroups_2024-Update
GRMZM2G404188 No alias BTB-POZ and MATH domain 1 0.03 Orthogroups_2024-Update
Glyma.16G036700 No alias BTB-POZ and MATH domain 4 0.03 Orthogroups_2024-Update
LOC_Os10g28860 No alias MBTB39 - Bric-a-Brac, Tramtrack, Broad Complex BTB... 0.02 Orthogroups_2024-Update
PSME_00004568-RA No alias (at3g03740 : 220.0) BTB-POZ and MATH domain 4 (BPM4);... 0.03 Orthogroups_2024-Update
PSME_00017111-RA No alias (at3g03740 : 250.0) BTB-POZ and MATH domain 4 (BPM4);... 0.02 Orthogroups_2024-Update
Seita.3G024400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G020400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G216300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G216700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G198500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G242700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G081701.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006811 ion transport IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 473 583
IPR000210 BTB/POZ_dom 114 222
No external refs found!