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  5. LOC_Os11g43750

LOC_Os11g43750


Description : polygalacturonase, putative, expressed


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g43750
Cluster HCCA clusters: cluster_0057

Target Alias Description ECC score Gene Family Method Actions
A4A49_22271 No alias putative polygalacturonase 0.02 Orthogroups_2024-Update
Brara.A00457.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.16G033000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G236700 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.4G004900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Seita.8G220900.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc12g009210 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G42950.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
CC GO:0031390 Ctf18 RFC-like complex IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 130 413
No external refs found!