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  5. LOC_Os11g47840

LOC_Os11g47840


Description : OsRhmbd18 - Putative Rhomboid homologue, expressed


Gene families : OG_42_0000533 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000533_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os11g47840
Cluster HCCA clusters: cluster_0016

Target Alias Description ECC score Gene Family Method Actions
A4A49_34800 No alias rhomboid-like protein 3 0.03 Orthogroups_2024-Update
At1g52580 No alias RHOMBOID-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSR0] 0.03 Orthogroups_2024-Update
At5g07250 No alias Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178UBV1] 0.02 Orthogroups_2024-Update
Brara.I01408.1 No alias protease *(RBL) 0.04 Orthogroups_2024-Update
Brara.J02500.1 No alias protease *(RBL) 0.02 Orthogroups_2024-Update
Glyma.03G079800 No alias RHOMBOID-like 1 0.03 Orthogroups_2024-Update
Kfl00353_0040 kfl00353_0040_v1.1 (at2g29050 : 206.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00025300-RA No alias (at2g29050 : 129.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00033639-RA No alias (at2g29050 : 182.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00034704-RA No alias (at2g29050 : 143.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00049830-RA No alias (at2g29050 : 216.0) RHOMBOID-like 1 (RBL1); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.001G241300 No alias RHOMBOID-like 1 0.03 Orthogroups_2024-Update
Potri.002G090400 No alias Rhomboid-related intramembrane serine protease family protein 0.03 Orthogroups_2024-Update
Pp1s9_388V6 No alias membrane protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
BP GO:0001101 response to acid chemical IEP Predicted GO
BP GO:0003006 developmental process involved in reproduction IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005758 mitochondrial intermembrane space IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0009793 embryo development ending in seed dormancy IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016530 metallochaperone activity IEP Predicted GO
MF GO:0016531 copper chaperone activity IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
CC GO:0031970 organelle envelope lumen IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR022764 Peptidase_S54_rhomboid_dom 109 250
No external refs found!