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  5. LOC_Os12g01850

LOC_Os12g01850


Description : pentatricopeptide, putative, expressed


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g01850
Cluster HCCA clusters: cluster_0027

Target Alias Description ECC score Gene Family Method Actions
Bradi1g20737 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g21907 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g27440 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g05000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g37252 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.B03211.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G320723 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G018170.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G090780.5 No alias RNA editing factor *(ECB2/VAC1) 0.02 Orthogroups_2024-Update
HORVU3Hr1G080810.1 No alias RNA editing factor *(MEF10) 0.04 Orthogroups_2024-Update
HORVU4Hr1G021240.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G056450.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.07 Orthogroups_2024-Update
LOC_Os04g02850 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g14130 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g39970 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_291996g0010 No alias (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
MA_86628g0010 No alias (at1g11290 : 652.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.03 Orthogroups_2024-Update
PSME_00006107-RA No alias (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00022686-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00024530-RA No alias (at4g18750 : 707.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00025402-RA No alias (at3g02010 : 629.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00048581-RA No alias (at4g02750 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00052756-RA No alias (at3g09040 : 614.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.006G001200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Seita.4G168200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G242100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G380100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g098150 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc02g069500 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc02g070710 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g037380 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen12g002530 No alias PPR repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
BP GO:0006090 pyruvate metabolic process IEP Predicted GO
BP GO:0006096 glycolytic process IEP Predicted GO
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006733 oxidoreduction coenzyme metabolic process IEP Predicted GO
BP GO:0006757 ATP generation from ADP IEP Predicted GO
BP GO:0009132 nucleoside diphosphate metabolic process IEP Predicted GO
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Predicted GO
BP GO:0009166 nucleotide catabolic process IEP Predicted GO
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Predicted GO
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Predicted GO
BP GO:0019362 pyridine nucleotide metabolic process IEP Predicted GO
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Predicted GO
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Predicted GO
BP GO:0042866 pyruvate biosynthetic process IEP Predicted GO
BP GO:0046031 ADP metabolic process IEP Predicted GO
BP GO:0046434 organophosphate catabolic process IEP Predicted GO
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Predicted GO
BP GO:0046939 nucleotide phosphorylation IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0072524 pyridine-containing compound metabolic process IEP Predicted GO
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901292 nucleoside phosphate catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 512 635
IPR002885 Pentatricopeptide_repeat 312 339
IPR002885 Pentatricopeptide_repeat 212 236
IPR002885 Pentatricopeptide_repeat 239 269
IPR002885 Pentatricopeptide_repeat 138 157
IPR002885 Pentatricopeptide_repeat 481 507
IPR002885 Pentatricopeptide_repeat 341 370
IPR002885 Pentatricopeptide_repeat 110 132
IPR002885 Pentatricopeptide_repeat 412 436
No external refs found!