LOC_Os12g04090


Description : zinc finger, C3HC4 type domain containing protein


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g04090
Cluster HCCA clusters: cluster_0132

Target Alias Description ECC score Gene Family Method Actions
Bradi3g34010 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G053210 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os11g02670 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
PSME_00032072-RA No alias (at3g56580 : 108.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G231000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G083001 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Potri.006G217600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G127600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G086500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G054700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G253600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G074600.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G224300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.010G199100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc09g059130 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen08g021220 No alias Ring finger domain 0.02 Orthogroups_2024-Update
evm.model.contig_4465.8 No alias (at3g19950 : 80.5) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004529 exodeoxyribonuclease activity IEP Predicted GO
MF GO:0004536 deoxyribonuclease activity IEP Predicted GO
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP Predicted GO
MF GO:0008409 5'-3' exonuclease activity IEP Predicted GO
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 135 177
No external refs found!