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Description : zinc finger, C3HC4 type domain containing protein, expressed
Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza release: LOC_Os12g04660 | |
| Cluster | HCCA clusters: cluster_0118 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At3g13228 | No alias | RING/U-box superfamily protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g35540 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Brara.B01772.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.C02255.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.G00930.1 | No alias | E3 ubiquitin ligase *(SNIPER) | 0.03 | Orthogroups_2024-Update | |
| Brara.H02157.1 | No alias | E3 ubiquitin ligase *(SNIPER) | 0.03 | Orthogroups_2024-Update | |
| Brara.I03147.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.K00814.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Cre10.g422050 | No alias | RING/U-box superfamily protein | 0.01 | Orthogroups_2024-Update | |
| LOC_Os07g43740 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_281830g0010 | No alias | (at5g08139 : 89.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| MA_289134g0010 | No alias | (at5g15820 : 106.0) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| MA_433917g0010 | No alias | (at2g40830 : 92.0) Encodes a putative RING-H2 finger... | 0.03 | Orthogroups_2024-Update | |
| MA_9328282g0010 | No alias | (at5g01980 : 161.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| Potri.006G164500 | No alias | COP1-interacting protein 8 | 0.03 | Orthogroups_2024-Update | |
| Potri.014G093500 | No alias | Protease-associated (PA) RING/U-box zinc finger family protein | 0.02 | Orthogroups_2024-Update | |
| Seita.8G172700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.8G172800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Solyc01g009000 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) | 0.03 | Orthogroups_2024-Update | |
| Sopen02g034170 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update | |
| Sopen03g029300 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update | |
| Sopen07g026890 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0004888 | transmembrane signaling receptor activity | IEP | Predicted GO |
| MF | GO:0004970 | ionotropic glutamate receptor activity | IEP | Predicted GO |
| MF | GO:0005230 | extracellular ligand-gated ion channel activity | IEP | Predicted GO |
| CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
| MF | GO:0008066 | glutamate receptor activity | IEP | Predicted GO |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| MF | GO:0015276 | ligand-gated ion channel activity | IEP | Predicted GO |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
| MF | GO:0022824 | transmitter-gated ion channel activity | IEP | Predicted GO |
| MF | GO:0022834 | ligand-gated channel activity | IEP | Predicted GO |
| MF | GO:0022835 | transmitter-gated channel activity | IEP | Predicted GO |
| MF | GO:0022836 | gated channel activity | IEP | Predicted GO |
| MF | GO:0022839 | ion gated channel activity | IEP | Predicted GO |
| MF | GO:0030594 | neurotransmitter receptor activity | IEP | Predicted GO |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
| MF | GO:0038023 | signaling receptor activity | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
| MF | GO:0060089 | molecular transducer activity | IEP | Predicted GO |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0065007 | biological regulation | IEP | Predicted GO |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 146 | 187 |
| No external refs found! |