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  5. Solyc01g090780

Solyc01g090780


Description : CCR4-NOT transcription complex subunit 1 (AHRD V3.3 *** A0A0B2PP65_GLYSO)


Gene families : OG_42_0002100 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002100_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc01g090780
Cluster HCCA clusters: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
At1g02080 No alias Transcription regulator [Source:UniProtKB/TrEMBL;Acc:F4HVV6] 0.05 Orthogroups_2024-Update
Glyma.03G118400 No alias transcription regulators 0.03 Orthogroups_2024-Update
HORVU4Hr1G088210.35 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update
MA_42843g0010 No alias (at1g02080 : 1165.0) transcription regulators; FUNCTIONS... 0.04 Orthogroups_2024-Update
Pp1s41_25V6 No alias T7I23.15; transcriptional regulator-related [Arabidopsis... 0.02 Orthogroups_2024-Update
Seita.9G577600.1 No alias scaffold component *(NOT1) of mRNA deadenylation CCR4-NOT complex 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR007196 CCR4-Not_Not1_C 2018 2388
IPR032194 CNOT1_HEAT 475 590
IPR032193 CNOT1_TTP_bind 657 810
IPR024557 CCR4-Not_Not1su_DUF3819 1303 1444
IPR032191 CNOT1_CAF1_bind 959 1179
No external refs found!