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  5. Solyc09g010400

Solyc09g010400


Description : Histone H2A (AHRD V3.3 *** K4CR67_SOLLC)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g010400
Cluster HCCA clusters: Cluster_209

Target Alias Description ECC score Gene Family Method Actions
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.03 Orthogroups_2024-Update
Brara.A02813.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Brara.B01060.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.C01065.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.02 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.03G148100 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.04 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.05 Orthogroups_2024-Update
Glyma.19G151400 No alias gamma histone variant H2AX 0.03 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.04 Orthogroups_2024-Update
HORVU2Hr1G043860.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.02 Orthogroups_2024-Update
Kfl00125_0190 kfl00125_0190_v1.1 (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... 0.01 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
PSME_00040346-RA No alias (p50567|h2a_chlre : 144.0) Histone H2A - Chlamydomonas... 0.04 Orthogroups_2024-Update
Seita.3G347600.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Sobic.002G059200.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
evm.model.contig_498.5 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.02 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 16 92
IPR032454 Histone_H2A_C 95 128
No external refs found!