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LOC_Os12g09290


Description : tRNA pseudouridine synthase family protein, putative, expressed


Gene families : OG_42_0008648 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008648_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os12g09290
Cluster HCCA clusters: cluster_0059

Target Alias Description ECC score Gene Family Method Actions
Pp1s86_182V6 No alias trna pseudouridine synthase a 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0009451 RNA modification IEA InterProScan predictions
MF GO:0009982 pseudouridine synthase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR020097 PsdUridine_synth_TruA_a/b_dom 76 186
IPR020097 PsdUridine_synth_TruA_a/b_dom 227 388
No external refs found!