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  5. Solyc01g090810

Solyc01g090810


Description : beta-expansin precursor


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g090810
Cluster HCCA clusters: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
234188 No alias expansin B3 0.02 Orthogroups_2024-Update
A4A49_20975 No alias putative expansin-b2 0.03 Orthogroups_2024-Update
At2g45110 No alias Expansin-B4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHD1] 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 177 258
IPR009009 RlpA-like_DPBB 83 164
No external refs found!