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  5. LOC_Os12g12380

LOC_Os12g12380


Description : transposon protein, putative, unclassified, expressed


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g12380
Cluster HCCA clusters: cluster_0130

Target Alias Description ECC score Gene Family Method Actions
At1g76320 No alias Protein FAR1-RELATED SEQUENCE 4... 0.02 Orthogroups_2024-Update
At2g27110 No alias Protein FAR1-RELATED SEQUENCE 3... 0.04 Orthogroups_2024-Update
Bradi1g33801 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Bradi4g16767 No alias FAR1-related sequence 5 0.04 Orthogroups_2024-Update
Glyma.06G229800 No alias FAR1-related sequence 5 0.03 Orthogroups_2024-Update
Glyma.09G039300 No alias FAR1-related sequence 11 0.02 Orthogroups_2024-Update
LOC_Os11g14020 No alias transposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Potri.010G140600 No alias FAR1-related sequence 11 0.02 Orthogroups_2024-Update
Seita.2G330400.1 No alias FRS/FRF-type transcription factor 0.02 Orthogroups_2024-Update
Sopen07g004620 No alias MULE transposase domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006658 phosphatidylserine metabolic process IEP Predicted GO
BP GO:0006659 phosphatidylserine biosynthetic process IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
BP GO:0008593 regulation of Notch signaling pathway IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0009967 positive regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0010647 positive regulation of cell communication IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0023056 positive regulation of signaling IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0045747 positive regulation of Notch signaling pathway IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0048522 positive regulation of cellular process IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0048584 positive regulation of response to stimulus IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007527 Znf_SWIM 563 593
IPR004330 FAR1_DNA_bnd_dom 97 187
IPR018289 MULE_transposase_dom 280 371
No external refs found!