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  5. LOC_Os12g12850

LOC_Os12g12850


Description : ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os12g12850
Cluster HCCA clusters: cluster_0035

Target Alias Description ECC score Gene Family Method Actions
A4A49_00825 No alias chaperone protein clpd, chloroplastic 0.02 Orthogroups_2024-Update
At5g15450 No alias Chaperone protein ClpB3, chloroplastic... 0.02 Orthogroups_2024-Update
Brara.C01497.1 No alias chaperone component *(ClpD) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
Cre11.g467575 No alias casein lytic proteinase B3 0.01 Orthogroups_2024-Update
LOC_Os05g44340 No alias heat shock protein 101, putative, expressed 0.04 Orthogroups_2024-Update
Seita.3G091800.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
Seita.7G079600.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
evm.model.tig00020563.86 No alias (at5g50920 : 990.0) Encodes a protein that is similar to... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Predicted GO
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
MF GO:0005534 galactose binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006812 cation transport IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008417 fucosyltransferase activity IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Predicted GO
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
CC GO:0033176 proton-transporting V-type ATPase complex IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
CC GO:0044437 vacuolar part IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004176 Clp_N 103 155
IPR004176 Clp_N 179 230
IPR003959 ATPase_AAA_core 294 410
IPR003959 ATPase_AAA_core 631 805
IPR019489 Clp_ATPase_C 812 891
No external refs found!