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  5. LOC_Os12g20040

LOC_Os12g20040


Description : retrotransposon, putative, centromere-specific, expressed


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g20040
Cluster HCCA clusters: cluster_0071

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g61190 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
Mp2g03770.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Solyc10g052420 No alias No description available 0.02 Orthogroups_2024-Update
Solyc11g020560 No alias No description available 0.02 Orthogroups_2024-Update
Sopen08g013300 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen10g008640 No alias Retrotransposon gag protein 0.02 Orthogroups_2024-Update
evm.model.tig00001182.5 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00021758.17 No alias (p31843|rrpo_oenbe : 98.2) RNA-directed DNA polymerase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000477 RT_dom 230 385
No external refs found!