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  5. LOC_Os12g21700

LOC_Os12g21700


Description : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g21700
Cluster HCCA clusters: cluster_0033

Target Alias Description ECC score Gene Family Method Actions
Bradi2g09340 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Orthogroups_2024-Update
GRMZM2G107491 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
GRMZM2G146514 No alias zinc finger protein 1 0.04 Orthogroups_2024-Update
Glyma.18G241300 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
Potri.019G053200 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
Seita.5G056300.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
Sobic.003G117800.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Sobic.005G111700.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Solyc11g008900 No alias Zinc finger transcription factor 65 0.03 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 160 184
IPR000571 Znf_CCCH 114 138
IPR000571 Znf_CCCH 69 93
IPR000571 Znf_CCCH 320 345
IPR000571 Znf_CCCH 366 391
No external refs found!