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  5. LOC_Os12g23770

LOC_Os12g23770


Description : retrotransposon protein, putative, LINE subclass, expressed


Gene families : OG_42_0000731 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g23770
Cluster HCCA clusters: cluster_0134

Target Alias Description ECC score Gene Family Method Actions
HORVU7Hr1G048270.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os10g19240 No alias retrotransposon protein, putative, LINE subclass, expressed 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR026960 RVT-Znf 797 880
IPR000477 RT_dom 309 552
No external refs found!