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  5. LOC_Os12g24080

LOC_Os12g24080


Description : HECT-domain domain containing protein, expressed


Gene families : OG_42_0001888 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g24080
Cluster HCCA clusters: cluster_0107

Target Alias Description ECC score Gene Family Method Actions
Bradi4g07997 No alias ubiquitin-protein ligase 1 0.04 Orthogroups_2024-Update
Cre10.g433900 No alias ubiquitin-protein ligase 1 0.01 Orthogroups_2024-Update
Glyma.02G216000 No alias ubiquitin-protein ligase 1 0.02 Orthogroups_2024-Update
Glyma.04G096900 No alias ubiquitin-protein ligase 1 0.03 Orthogroups_2024-Update
Glyma.05G133100 No alias ubiquitin-protein ligase 1 0.03 Orthogroups_2024-Update
Glyma.08G087600 No alias ubiquitin-protein ligase 1 0.05 Orthogroups_2024-Update
Glyma.14G183000 No alias ubiquitin-protein ligase 2 0.04 Orthogroups_2024-Update
HORVU5Hr1G033930.8 No alias E3 ubiquitin ligase *(UPL1) 0.03 Orthogroups_2024-Update
MA_7295g0020 No alias (at1g70320 : 866.0) encodes a ubiquitin-protein... 0.02 Orthogroups_2024-Update
Mp4g21620.1 No alias monomeric E3 ubiquitin ligase (HECT) 0.02 Orthogroups_2024-Update
Pp1s138_130V6 No alias e3 ubiquitin protein ligase 0.03 Orthogroups_2024-Update
Pp1s42_128V6 No alias e3 ubiquitin protein ligase 0.02 Orthogroups_2024-Update
Seita.2G152700.1 No alias E3 ubiquitin ligase *(UPL1) 0.03 Orthogroups_2024-Update
Sobic.008G092600.1 No alias E3 ubiquitin ligase *(UPL1) 0.03 Orthogroups_2024-Update
Solyc07g065630 No alias E3 ubiquitin-protein ligase UPL1 (AHRD V3.3 *** W9QFS0_9ROSA) 0.02 Orthogroups_2024-Update
Sopen04g030340 No alias HECT-domain (ubiquitin-transferase) 0.06 Orthogroups_2024-Update
evm.model.contig_2051.21 No alias (at1g55860 : 460.0) encodes a ubiquitin-protein ligase... 0.02 Orthogroups_2024-Update
evm.model.contig_2081.3 No alias (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000569 HECT_dom 689 999
IPR025527 DUF4414 1 27
No external refs found!