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Description : zinc finger, C3HC4 type domain containing protein, expressed
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza release: LOC_Os12g24490 | |
| Cluster | HCCA clusters: cluster_0077 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_18116 | No alias | ring-h2 finger protein atl78 | 0.03 | Orthogroups_2024-Update | |
| A4A49_40065 | No alias | ring-h2 finger protein atl70 | 0.02 | Orthogroups_2024-Update | |
| A4A49_42691 | No alias | ring-h2 finger protein atl7 | 0.02 | Orthogroups_2024-Update | |
| At1g49200 | No alias | RING-H2 finger protein ATL75... | 0.02 | Orthogroups_2024-Update | |
| At2g18670 | No alias | RING-H2 finger protein ATL56... | 0.04 | Orthogroups_2024-Update | |
| At3g10910 | No alias | RING-H2 finger protein ATL72... | 0.02 | Orthogroups_2024-Update | |
| Brara.H00897.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.H01760.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Glyma.08G070100 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.13G042300 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.19G010400 | No alias | hypoxia-responsive family protein / zinc finger... | 0.02 | Orthogroups_2024-Update | |
| HORVU0Hr1G021450.9 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G050490.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| MA_308999g0010 | No alias | (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... | 0.03 | Orthogroups_2024-Update | |
| MA_38494g0010 | No alias | (at1g49230 : 119.0) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| MA_43543g0010 | No alias | (at3g16720 : 107.0) RING-H2 protein induced after... | 0.02 | Orthogroups_2024-Update | |
| PSME_00034763-RA | No alias | (at5g05280 : 85.1) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| PSME_00042839-RA | No alias | (at4g35480 : 80.9) Encodes a putative RING-H2 finger... | 0.02 | Orthogroups_2024-Update | |
| Pp1s100_96V6 | No alias | No description available | 0.02 | Orthogroups_2024-Update | |
| Pp1s14_164V6 | No alias | zinc finger (c3hc4-type ring finger) family protein | 0.02 | Orthogroups_2024-Update | |
| Sobic.004G110300.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G193000.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Sobic.008G152100.2 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Solyc01g066430 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT2G47560.1) | 0.02 | Orthogroups_2024-Update | |
| Solyc08g076830 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| Solyc11g005310 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) | 0.03 | Orthogroups_2024-Update | |
| Solyc11g066510 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** AT2G27940.1) | 0.03 | Orthogroups_2024-Update | |
| Sopen06g017190 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update | |
| Sopen10g032300 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005542 | folic acid binding | IEP | Predicted GO |
| CC | GO:0005618 | cell wall | IEP | Predicted GO |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | Predicted GO |
| MF | GO:0016762 | xyloglucan:xyloglucosyl transferase activity | IEP | Predicted GO |
| CC | GO:0030312 | external encapsulating structure | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| MF | GO:0033218 | amide binding | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| CC | GO:0048046 | apoplast | IEP | Predicted GO |
| MF | GO:0072341 | modified amino acid binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 122 | 165 |
| No external refs found! |