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  5. LOC_Os12g25120

LOC_Os12g25120


Description : core histone H2A/H2B/H3/H4, putative, expressed


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Oryza release: LOC_Os12g25120
Cluster HCCA clusters: cluster_0071

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G008800.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU4Hr1G058810.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU4Hr1G070250.3 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU5Hr1G105090.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G092390.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU7Hr1G117230.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
LOC_Os03g51200 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
MA_10434390g0010 No alias (at5g54640 : 110.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
MA_169054g0020 No alias (p50567|h2a_chlre : 140.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
PSME_00017670-RA No alias (p35063|h2ax_picab : 188.0) Histone H2AX - Picea abies... 0.01 Orthogroups_2024-Update
PSME_00049247-RA No alias (p50567|h2a_chlre : 114.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
Potri.005G040700 No alias gamma histone variant H2AX 0.02 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 126
IPR007125 Histone_H2A/H2B/H3 14 90
No external refs found!