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  5. LOC_Os12g31800

LOC_Os12g31800


Description : glycine-rich RNA-binding protein 7, putative, expressed


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g31800
Cluster HCCA clusters: cluster_0043

Target Alias Description ECC score Gene Family Method Actions
A4A49_55770 No alias glycine-rich rna-binding protein 0.02 Orthogroups_2024-Update
A4A49_62682 No alias glycine-rich rna-binding protein 0.02 Orthogroups_2024-Update
At1g18630 No alias GR-RBP6 [Source:UniProtKB/TrEMBL;Acc:A0A178WQQ6] 0.02 Orthogroups_2024-Update
At2g21660 No alias Glycine-rich RNA-binding protein 7... 0.03 Orthogroups_2024-Update
At4g39260 No alias Glycine-rich RNA-binding protein 8... 0.02 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.04 Orthogroups_2024-Update
Bradi1g12787 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
Bradi1g55020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
Bradi2g58690 No alias glycine-rich RNA-binding protein 4 0.03 Orthogroups_2024-Update
Bradi4g06840 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Brara.C04224.1 No alias RNA editing factor *(ORRM3) 0.02 Orthogroups_2024-Update
Brara.G00334.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.K01454.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G042118 No alias glycine-rich RNA-binding protein 2 0.02 Orthogroups_2024-Update
Glyma.04G012700 No alias cold, circadian rhythm, and rna binding 2 0.03 Orthogroups_2024-Update
Glyma.05G020900 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.11G255000 No alias glycine-rich RNA-binding protein 2 0.03 Orthogroups_2024-Update
Glyma.18G266500 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
HORVU3Hr1G093400.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
HORVU4Hr1G059000.3 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G002150.1 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G118010.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Kfl00090_0320 kfl00090_0320_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Kfl00609_0010 kfl00609_0010_v1.... (p49310|grp1_sinal : 126.0) Glycine-rich RNA-binding... 0.01 Orthogroups_2024-Update
MA_77292g0010 No alias (at5g54580 : 113.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
MA_8928477g0010 No alias (at5g61030 : 124.0) encodes a glycine-rich RNA binding... 0.02 Orthogroups_2024-Update
Mp1g18780.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
Mp4g15980.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Orthogroups_2024-Update
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Orthogroups_2024-Update
Potri.004G155300 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Potri.009G116400 No alias cold, circadian rhythm, and RNA binding 1 0.03 Orthogroups_2024-Update
Pp1s118_101V6 No alias glycine-rich rna-binding 0.02 Orthogroups_2024-Update
Pp1s123_58V6 No alias glycine-rich rna-binding protein 2 0.02 Orthogroups_2024-Update
Pp1s136_70V6 No alias glycine-rich rna-binding protein 0.03 Orthogroups_2024-Update
Pp1s143_11V6 No alias glycine-rich rna-binding 0.02 Orthogroups_2024-Update
Seita.2G062600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G021300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G022600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G401400.1 No alias RNA editing factor *(ORRM3) 0.04 Orthogroups_2024-Update
Sobic.008G185900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g109660 No alias meloidogyne-induced giant cell protein DB275 0.04 Orthogroups_2024-Update
Solyc02g088790 No alias RNA-binding protein (AHRD V3.3 *** Q941H9_TOBAC) 0.02 Orthogroups_2024-Update
Solyc10g051390 No alias RNA-binding glycine-rich protein (AHRD V3.3 *** D6PZY6_TOBAC) 0.04 Orthogroups_2024-Update
Sopen02g016120 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update
Sopen02g033510 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0005319 lipid transporter activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006869 lipid transport IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016049 cell growth IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
CC GO:0031225 anchored component of membrane IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0040007 growth IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
MF GO:0050661 NADP binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
BP GO:0120009 intermembrane lipid transfer IEP Predicted GO
MF GO:0120013 intermembrane lipid transfer activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 33 103
No external refs found!