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  5. LOC_Os12g42990

LOC_Os12g42990


Description : retrotransposon protein, putative, unclassified, expressed


Gene families : OG_42_0000057 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000057_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza release: LOC_Os12g42990
Cluster HCCA clusters: cluster_0002

Target Alias Description ECC score Gene Family Method Actions
Seita.1G145600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.3G282400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G104400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G115000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.8G193900.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEA InterProScan predictions
MF GO:0003678 DNA helicase activity IEA InterProScan predictions
BP GO:0006281 DNA repair IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
CC GO:0030008 TRAPP complex IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
InterPro domains Description Start Stop
IPR010285 DNA_helicase_pif1-like 9 353
No external refs found!