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Description : photosystem II light harvesting complex gene 2.2
Gene families : OG_42_0000070 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000070_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Chlamydomonas release: Cre03.g156900 | |
| Cluster | HCCA clusters: Cluster_103 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 104804 | No alias | Chlorophyll A-B binding family protein | 0.01 | Orthogroups_2024-Update | |
| Bradi1g24760 | No alias | light-harvesting chlorophyll B-binding protein 3 | 0.02 | Orthogroups_2024-Update | |
| Bradi4g37210 | No alias | photosystem II light harvesting complex gene B1B2 | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G160268 | No alias | light-harvesting chlorophyll-protein complex I subunit A4 | 0.01 | Orthogroups_2024-Update | |
| Glyma.02G064700 | No alias | photosystem I light harvesting complex gene 1 | 0.01 | Orthogroups_2024-Update | |
| Glyma.07G047600 | No alias | photosystem I light harvesting complex gene 2 | 0.01 | Orthogroups_2024-Update | |
| Glyma.09G154700 | No alias | light harvesting complex of photosystem II 5 | 0.02 | Orthogroups_2024-Update | |
| Glyma.16G016100 | No alias | photosystem I light harvesting complex gene 2 | 0.01 | Orthogroups_2024-Update | |
| Kfl00517_0040 | kfl00517_0040_v1.1 | (at3g54890 : 116.0) Encodes a component of the light... | 0.01 | Orthogroups_2024-Update | |
| LOC_Os06g21590 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os08g33820 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os11g13890 | No alias | chlorophyll A-B binding protein, putative, expressed | 0.01 | Orthogroups_2024-Update | |
| MA_65346g0010 | No alias | (at3g47470 : 317.0) Encodes a chlorophyll a/b-binding... | 0.01 | Orthogroups_2024-Update | |
| Mp7g05980.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.01 | Orthogroups_2024-Update | |
| Mp7g06710.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.01 | Orthogroups_2024-Update | |
| Mp8g12010.1 | No alias | component LHCq of LHC-II complex | 0.01 | Orthogroups_2024-Update | |
| PSME_00054524-RA | No alias | (p10049|cb21_pinth : 468.0) Chlorophyll a-b binding... | 0.01 | Orthogroups_2024-Update | |
| Pp1s252_28V6 | No alias | chlorophyll a-b binding protein of lhcii | 0.01 | Orthogroups_2024-Update | |
| Pp1s52_157V6 | No alias | light-harvesting complex ii protein lhcb2 | 0.02 | Orthogroups_2024-Update | |
| Pp1s651_2V6 | No alias | chlorophyll a-b binding protein | 0.02 | Orthogroups_2024-Update | |
| Seita.8G080900.1 | No alias | component *(LHCb5) of LHC-II complex | 0.01 | Orthogroups_2024-Update | |
| Sobic.002G352100.1 | No alias | component *(LHCa2) of LHC-I complex | 0.01 | Orthogroups_2024-Update | |
| Sobic.005G087000.1 | No alias | component *(LHCb5) of LHC-II complex | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005506 | iron ion binding | IEP | Predicted GO |
| MF | GO:0005507 | copper ion binding | IEP | Predicted GO |
| BP | GO:0006812 | cation transport | IEP | Predicted GO |
| BP | GO:0006814 | sodium ion transport | IEP | Predicted GO |
| MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0015672 | monovalent inorganic cation transport | IEP | Predicted GO |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | Predicted GO |
| MF | GO:0020037 | heme binding | IEP | Predicted GO |
| BP | GO:0030001 | metal ion transport | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0046906 | tetrapyrrole binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Predicted GO |
| BP | GO:0071805 | potassium ion transmembrane transport | IEP | Predicted GO |
| MF | GO:0071949 | FAD binding | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 69 | 235 |
| No external refs found! |