1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre03.g172950

Cre03.g172950


Description : homologue of NAP57


Gene families : OG_42_0004273 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004273_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre03.g172950
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
81986 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
At3g57150 No alias Uncharacterized protein At3g57150 (Fragment)... 0.04 Orthogroups_2024-Update
Bradi2g04950 No alias homologue of NAP57 0.02 Orthogroups_2024-Update
Bradi4g38770 No alias homologue of NAP57 0.02 Orthogroups_2024-Update
Brara.G01728.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 Orthogroups_2024-Update
GRMZM2G172956 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
Glyma.08G176900 No alias homologue of NAP57 0.01 Orthogroups_2024-Update
Glyma.15G056100 No alias homologue of NAP57 0.03 Orthogroups_2024-Update
HORVU2Hr1G027370.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 Orthogroups_2024-Update
HORVU2Hr1G027400.5 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 Orthogroups_2024-Update
Kfl00043_0130 kfl00043_0130_v1.1 (at3g57150 : 649.0) Encodes a putative pseudouridine... 0.03 Orthogroups_2024-Update
LOC_Os03g25450 No alias h/ACA ribonucleoprotein complex subunit 4, putative, expressed 0.01 Orthogroups_2024-Update
Mp4g12650.1 No alias pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.01 Orthogroups_2024-Update
Potri.006G044100 No alias homologue of NAP57 0.02 Orthogroups_2024-Update
Potri.016G041200 No alias homologue of NAP57 0.02 Orthogroups_2024-Update
Pp1s251_17V6 No alias F24I3.230; dyskerin, putative / nucleolar protein NAP57,... 0.01 Orthogroups_2024-Update
Seita.2G404800.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 Orthogroups_2024-Update
Seita.5G057000.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 Orthogroups_2024-Update
Sobic.002G389500.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 Orthogroups_2024-Update
Sobic.003G117100.1 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 Orthogroups_2024-Update
Solyc02g081810 No alias H/ACA ribonucleoprotein complex subunit 4 (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Sopen02g026410 No alias DKCLD (NUC011) domain 0.06 Orthogroups_2024-Update
evm.model.tig00000553.10 No alias (at3g57150 : 635.0) Encodes a putative pseudouridine... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0006396 RNA processing IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP Predicted GO
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP Predicted GO
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036265 RNA (guanine-N7)-methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032819 TruB_C 228 296
IPR012960 Dyskerin-like 49 106
IPR002501 PsdUridine_synth_N 110 227
IPR002478 PUA 300 373
No external refs found!