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  5. Solyc09g059130

Solyc09g059130


Description : LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G19950.3)


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g059130
Cluster HCCA clusters: Cluster_305

Target Alias Description ECC score Gene Family Method Actions
Bradi3g34010 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G268100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os02g49550 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04090 No alias zinc finger, C3HC4 type domain containing protein 0.02 Orthogroups_2024-Update
Potri.019G086500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.8G172800.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sopen09g029310 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 97 139
No external refs found!