- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Protein LOW PSII ACCUMULATION 1, chloroplastic (AHRD V3.3 *** A0A199UH97_ANACO)
Gene families : OG_42_0008554 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008554_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc09g063140 | |
| Cluster | HCCA clusters: Cluster_144 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Seita.7G160400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003677 | DNA binding | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predicted GO |
| CC | GO:0005789 | endoplasmic reticulum membrane | IEP | Predicted GO |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
| BP | GO:0007029 | endoplasmic reticulum organization | IEP | Predicted GO |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Predicted GO |
| BP | GO:0010468 | regulation of gene expression | IEP | Predicted GO |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0016043 | cellular component organization | IEP | Predicted GO |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Predicted GO |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0019222 | regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Predicted GO |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Predicted GO |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Predicted GO |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Predicted GO |
| CC | GO:0044432 | endoplasmic reticulum part | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| BP | GO:0050789 | regulation of biological process | IEP | Predicted GO |
| BP | GO:0050794 | regulation of cellular process | IEP | Predicted GO |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predicted GO |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Predicted GO |
| MF | GO:0051540 | metal cluster binding | IEP | Predicted GO |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Predicted GO |
| MF | GO:0140110 | transcription regulator activity | IEP | Predicted GO |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predicted GO |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR021883 | LPA1-like | 68 | 145 |
| No external refs found! |