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  5. Solyc01g091910

Solyc01g091910


Description : phospholipase PLDb2


Gene families : OG_42_0000199 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000199_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g091910
Cluster HCCA clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Brara.A00265.1 No alias phospholipase-D *(PLD-delta) & EC_3.1 hydrolase acting... 0.03 Orthogroups_2024-Update
Brara.H01627.1 No alias phospholipase-D *(PLD-delta) & EC_3.1 hydrolase acting... 0.03 Orthogroups_2024-Update
Pp1s165_123V6 No alias phospholipase d 0.02 Orthogroups_2024-Update
Solyc06g068090 No alias phospholipase PLDa1 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR024632 PLipase_D_C 1026 1096
IPR001736 PLipase_D/transphosphatidylase 622 656
IPR001736 PLipase_D/transphosphatidylase 953 979
IPR000008 C2_dom 308 422
No external refs found!