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  5. Cre08.g364050

Cre08.g364050


Description : SWITCH/sucrose nonfermenting 3C


Gene families : OG_42_0001732 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001732_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre08.g364050
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
At1g21700 No alias SWI/SNF complex subunit SWI3C... 0.02 Orthogroups_2024-Update
Potri.005G180800 No alias SWITCH/sucrose nonfermenting 3C 0.03 Orthogroups_2024-Update
Pp1s341_85V6 No alias chromatin remodeling complex subunit 0.02 Orthogroups_2024-Update
Sobic.005G064000.1 No alias SMARCC component *(SWI3) of chromatin remodeling complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000228 nuclear chromosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
InterPro domains Description Start Stop
IPR032451 SMARCC_C 741 818
IPR032450 SMARCC_N 17 258
IPR001005 SANT/Myb 323 364
No external refs found!