Solyc01g093960

Description : MADS-box transcription factor (AHRD V3.3 *** A0A072TNM9_MEDTR)

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g093960
Cluster	HCCA clusters: Cluster_37

Target	Alias	Description	ECC score	Gene Family Method
A4A49_09228	No alias	mads-box protein jointless	0.03	Orthogroups_2024-Update
A4A49_14235	No alias	developmental protein sepallata 1	0.03	Orthogroups_2024-Update
A4A49_16645	No alias	agamous-like mads-box protein agl11	0.03	Orthogroups_2024-Update
A4A49_18989	No alias	agamous-like mads-box protein agl19	0.03	Orthogroups_2024-Update
A4A49_28929	No alias	agamous-like mads-box protein agl8	0.03	Orthogroups_2024-Update
A4A49_29655	No alias	floral homeotic protein globosa	0.03	Orthogroups_2024-Update
A4A49_39464	No alias	agamous-like mads-box protein agl8	0.03	Orthogroups_2024-Update
At1g26310	No alias	Transcription factor CAULIFLOWER...	0.03	Orthogroups_2024-Update
At3g61120	No alias	Agamous-like MADS-box protein AGL13...	0.03	Orthogroups_2024-Update
At5g51860	No alias	MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5]	0.02	Orthogroups_2024-Update
Bradi3g32090	No alias	AGAMOUS-like 20	0.04	Orthogroups_2024-Update
Brara.C00925.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.03	Orthogroups_2024-Update
Brara.D01509.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Brara.E00519.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.G01735.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G129034	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
GRMZM2G171365	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.01G020500	No alias	AGAMOUS-like 21	0.04	Orthogroups_2024-Update
Glyma.03G019300	No alias	AGAMOUS-like 20	0.03	Orthogroups_2024-Update
Glyma.04G043800	No alias	AGAMOUS-like 66	0.05	Orthogroups_2024-Update
Glyma.20G136600	No alias	AGAMOUS-like 62	0.05	Orthogroups_2024-Update
HORVU5Hr1G110470.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
HORVU6Hr1G002270.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os05g11414	No alias	OsMADS58 - MADS-box family gene with MIKCc type-box, expressed	0.03	Orthogroups_2024-Update
MA_101463g0010	No alias	(q9xj60\|mad50_orysa : 102.0) MADS-box transcription...	0.02	Orthogroups_2024-Update
Potri.005G150501	No alias	AGAMOUS-like 16	0.03	Orthogroups_2024-Update
Potri.010G154100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Potri.014G074100	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Pp1s55_280V6	No alias	mikc* mads-box transcription factor	0.03	Orthogroups_2024-Update
Seita.1G273400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
Solyc10g017640	No alias	MADS-box transcription factor (AHRD V3.3 - G7L1F7_MEDTR)	0.04	Orthogroups_2024-Update
Sopen01g037760	No alias	SRF-type transcription factor (DNA-binding and...	0.04	Orthogroups_2024-Update
Sopen12g029050	No alias	SRF-type transcription factor (DNA-binding and...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Predicted GO
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0003954	NADH dehydrogenase activity	IEP	Predicted GO
BP	GO:0006534	cysteine metabolic process	IEP	Predicted GO
BP	GO:0006535	cysteine biosynthetic process from serine	IEP	Predicted GO
BP	GO:0006563	L-serine metabolic process	IEP	Predicted GO
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Predicted GO
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Predicted GO
MF	GO:0008374	O-acyltransferase activity	IEP	Predicted GO
MF	GO:0009001	serine O-acetyltransferase activity	IEP	Predicted GO
BP	GO:0009069	serine family amino acid metabolic process	IEP	Predicted GO
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	Predicted GO
MF	GO:0016412	serine O-acyltransferase activity	IEP	Predicted GO
MF	GO:0016413	O-acetyltransferase activity	IEP	Predicted GO
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Predicted GO
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
BP	GO:0019344	cysteine biosynthetic process	IEP	Predicted GO
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predicted GO
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Predicted GO
BP	GO:0051259	protein complex oligomerization	IEP	Predicted GO
BP	GO:0051260	protein homooligomerization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	82	169
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Solyc01g093960

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation