Description : Ribosomal protein L4/L1 family
Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Chlamydomonas release: Cre09.g397697 | |
Cluster | HCCA clusters: Cluster_19 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
166994 | No alias | Ribosomal protein L4/L1 family | 0.06 | Orthogroups_2024-Update | |
At3g09630 | No alias | 60S ribosomal protein L4-1... | 0.03 | Orthogroups_2024-Update | |
Bradi1g05510 | No alias | Ribosomal protein L4/L1 family | 0.09 | Orthogroups_2024-Update | |
Bradi1g55510 | No alias | Ribosomal protein L4/L1 family | 0.1 | Orthogroups_2024-Update | |
Brara.A03522.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
Brara.C00088.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Brara.E03076.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
Brara.J02849.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
GRMZM2G007695 | No alias | Ribosomal protein L4/L1 family | 0.05 | Orthogroups_2024-Update | |
GRMZM2G100403 | No alias | Ribosomal protein L4/L1 family | 0.07 | Orthogroups_2024-Update | |
Glyma.03G177400 | No alias | Ribosomal protein L4/L1 family | 0.02 | Orthogroups_2024-Update | |
Glyma.10G048600 | No alias | Ribosomal protein L4/L1 family | 0.1 | Orthogroups_2024-Update | |
Glyma.13G136400 | No alias | Ribosomal protein L4/L1 family | 0.06 | Orthogroups_2024-Update | |
Glyma.19G178100 | No alias | Ribosomal protein L4/L1 family | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G075710.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
HORVU5Hr1G105870.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
Kfl00456_0100 | kfl00456_0100_v1.1 | (at3g09630 : 489.0) Ribosomal protein L4/L1 family;... | 0.03 | Orthogroups_2024-Update | |
Mp4g20310.1 | No alias | component RPL4 of LSU proteome component | 0.06 | Orthogroups_2024-Update | |
PSME_00003145-RA | No alias | (at3g09630 : 579.0) Ribosomal protein L4/L1 family;... | 0.02 | Orthogroups_2024-Update | |
Potri.016G084400 | No alias | Ribosomal protein L4/L1 family | 0.03 | Orthogroups_2024-Update | |
Potri.T159800 | No alias | Ribosomal protein L4/L1 family | 0.02 | Orthogroups_2024-Update | |
Pp1s10_102V6 | No alias | 60s ribosomal protein l4 | 0.08 | Orthogroups_2024-Update | |
Pp1s18_113V6 | No alias | 60s ribosomal protein l4 | 0.08 | Orthogroups_2024-Update | |
Pp1s40_305V6 | No alias | 60s ribosomal protein l4 | 0.12 | Orthogroups_2024-Update | |
Seita.2G055300.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.09 | Orthogroups_2024-Update | |
Seita.9G056000.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.02 | Orthogroups_2024-Update | |
Sobic.001G057300.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
Sobic.002G054000.1 | No alias | component *(uL4) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
Solyc09g007250 | No alias | 60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR) | 0.05 | Orthogroups_2024-Update | |
Solyc10g084350 | No alias | 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) | 0.02 | Orthogroups_2024-Update | |
Solyc10g086010 | No alias | 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) | 0.07 | Orthogroups_2024-Update | |
Sopen09g002120 | No alias | Ribosomal protein L4/L1 family | 0.04 | Orthogroups_2024-Update | |
Sopen10g033800 | No alias | Ribosomal protein L4/L1 family | 0.07 | Orthogroups_2024-Update | |
Sopen10g035380 | No alias | Ribosomal protein L4/L1 family | 0.09 | Orthogroups_2024-Update | |
evm.model.contig_2049.5 | No alias | (at3g09630 : 394.0) Ribosomal protein L4/L1 family;... | 0.04 | Orthogroups_2024-Update | |
evm.model.tig00022075.53 | No alias | (at3g09630 : 404.0) Ribosomal protein L4/L1 family;... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000045 | autophagosome assembly | IEP | Predicted GO |
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
BP | GO:0002097 | tRNA wobble base modification | IEP | Predicted GO |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003873 | 6-phosphofructo-2-kinase activity | IEP | Predicted GO |
MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
BP | GO:0005996 | monosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006000 | fructose metabolic process | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006743 | ubiquinone metabolic process | IEP | Predicted GO |
BP | GO:0006744 | ubiquinone biosynthetic process | IEP | Predicted GO |
BP | GO:0007033 | vacuole organization | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
MF | GO:0008443 | phosphofructokinase activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Predicted GO |
MF | GO:0019200 | carbohydrate kinase activity | IEP | Predicted GO |
BP | GO:0019318 | hexose metabolic process | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
BP | GO:0034227 | tRNA thio-modification | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042180 | cellular ketone metabolic process | IEP | Predicted GO |
BP | GO:0042181 | ketone biosynthetic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
BP | GO:0070925 | organelle assembly | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
BP | GO:1901661 | quinone metabolic process | IEP | Predicted GO |
BP | GO:1901663 | quinone biosynthetic process | IEP | Predicted GO |
BP | GO:1905037 | autophagosome organization | IEP | Predicted GO |
No external refs found! |