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  5. Solyc09g074090

Solyc09g074090


Description : Exosome complex component RRP4 homolog (AHRD V3.3 *** RRP4_ARATH)


Gene families : OG_42_0005702 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005702_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g074090
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
At1g03360 No alias RRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W3N1] 0.05 Orthogroups_2024-Update
Brara.J00177.1 No alias component *(RRP4) of exosome EXO9 core complex 0.04 Orthogroups_2024-Update
GRMZM2G009413 No alias ribosomal RNA processing 4 0.04 Orthogroups_2024-Update
HORVU7Hr1G038290.5 No alias component *(RRP4) of exosome EXO9 core complex 0.03 Orthogroups_2024-Update
Seita.7G169800.1 No alias component *(RRP4) of exosome EXO9 core complex 0.04 Orthogroups_2024-Update
Sobic.006G251600.1 No alias component *(RRP4) of exosome EXO9 core complex 0.08 Orthogroups_2024-Update
Sopen09g028910 No alias hypothetical protein 0.05 Orthogroups_2024-Update
evm.model.tig00000655.55 No alias (at1g03360 : 192.0) ribosomal RNA processing 4 (RRP4);... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 179 218
No external refs found!