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  5. Solyc09g074300

Solyc09g074300


Description : Histone H2A (AHRD V3.3 *** K4CV07_SOLLC)


Gene families : OG_42_0000138 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g074300
Cluster HCCA clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
170948 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
A4A49_29055 No alias putative histone h2a.4 0.03 Orthogroups_2024-Update
A4A49_56752 No alias putative histone h2a.1 0.03 Orthogroups_2024-Update
At4g27230 No alias Probable histone H2A.3 [Source:UniProtKB/Swiss-Prot;Acc:O81826] 0.03 Orthogroups_2024-Update
At5g27670 No alias Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178UFF2] 0.03 Orthogroups_2024-Update
At5g59870 No alias Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8] 0.04 Orthogroups_2024-Update
Brara.A02813.1 No alias histone *(H2A) 0.08 Orthogroups_2024-Update
Brara.B01060.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Brara.C01065.1 No alias histone *(H2A) 0.08 Orthogroups_2024-Update
Brara.E02150.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Brara.F00561.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Brara.F02852.1 No alias histone *(H2A) 0.08 Orthogroups_2024-Update
Brara.J01356.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Cre06.g265350 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre06.g268050 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre06.g268300 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g273900 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g274200 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g274800 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre06.g275850 No alias histone H2A 10 0.03 Orthogroups_2024-Update
Cre12.g504750 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre13.g570100 No alias histone H2A 10 0.01 Orthogroups_2024-Update
Cre17.g708550 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre17.g709200 No alias histone H2A 10 0.02 Orthogroups_2024-Update
Cre17.g711700 No alias histone H2A 10 0.04 Orthogroups_2024-Update
Cre17.g713400 No alias histone H2A 10 0.03 Orthogroups_2024-Update
GRMZM2G041381 No alias histone H2A 2 0.05 Orthogroups_2024-Update
GRMZM2G109448 No alias histone H2A 12 0.03 Orthogroups_2024-Update
GRMZM2G151726 No alias histone H2A 2 0.04 Orthogroups_2024-Update
GRMZM2G151826 No alias histone H2A 2 0.03 Orthogroups_2024-Update
Glyma.03G148100 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.03G241800 No alias gamma histone variant H2AX 0.07 Orthogroups_2024-Update
Glyma.12G215500 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Glyma.13G286000 No alias histone H2A 10 0.05 Orthogroups_2024-Update
Glyma.13G333800 No alias histone H2A 12 0.06 Orthogroups_2024-Update
Glyma.13G333900 No alias histone H2A 12 0.07 Orthogroups_2024-Update
Glyma.13G334300 No alias histone H2A 12 0.07 Orthogroups_2024-Update
Glyma.15G040200 No alias histone H2A 12 0.06 Orthogroups_2024-Update
Glyma.15G040300 No alias histone H2A 12 0.09 Orthogroups_2024-Update
Glyma.15G040400 No alias histone H2A 12 0.06 Orthogroups_2024-Update
Glyma.19G151400 No alias gamma histone variant H2AX 0.07 Orthogroups_2024-Update
Glyma.19G234100 No alias histone H2A 7 0.07 Orthogroups_2024-Update
HORVU5Hr1G026650.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU5Hr1G110680.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G011490.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU6Hr1G021160.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
HORVU6Hr1G021260.2 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
HORVU7Hr1G100100.3 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100110.4 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100120.13 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
HORVU7Hr1G100400.2 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Kfl00099_g21 kfl00099_g21_v1.1 (q2qpg9|h2axb_orysa : 166.0) Probable histone H2AXb -... 0.03 Orthogroups_2024-Update
Kfl00125_0190 kfl00125_0190_v1.1 (p50567|h2a_chlre : 169.0) Histone H2A - Chlamydomonas... 0.02 Orthogroups_2024-Update
LOC_Os03g17100 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os05g02300 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.03 Orthogroups_2024-Update
MA_213048g0010 No alias (p50567|h2a_chlre : 115.0) Histone H2A - Chlamydomonas... 0.05 Orthogroups_2024-Update
MA_22203g0020 No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.04 Orthogroups_2024-Update
MA_427046g0010 No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.03 Orthogroups_2024-Update
MA_7320190g0010 No alias (p19177|h2a_petcr : 149.0) Histone H2A - Petroselinum... 0.03 Orthogroups_2024-Update
MA_94328g0020 No alias (p35063|h2ax_picab : 194.0) Histone H2AX - Picea abies... 0.03 Orthogroups_2024-Update
MA_962778g0010 No alias (q2hu68|h2a1_medtr : 184.0) Probable histone H2A.1 -... 0.09 Orthogroups_2024-Update
Mp3g00840.1 No alias histone (H2A) 0.05 Orthogroups_2024-Update
PSME_00008207-RA No alias (p02276|h2a2_wheat : 135.0) Histone H2A.2.1 - Triticum... 0.03 Orthogroups_2024-Update
PSME_00008212-RA No alias (p50567|h2a_chlre : 107.0) Histone H2A - Chlamydomonas... 0.03 Orthogroups_2024-Update
PSME_00015855-RA No alias (at5g54640 : 145.0) Isolated from T-DNA insertion line,... 0.03 Orthogroups_2024-Update
PSME_00015856-RA No alias (q84nj4|h2a3_orysa : 144.0) Probable histone H2A.3 -... 0.03 Orthogroups_2024-Update
PSME_00050693-RA No alias (at4g27230 : 166.0) Encodes HTA2, a histone H2A... 0.01 Orthogroups_2024-Update
Potri.005G026500 No alias histone H2A 7 0.02 Orthogroups_2024-Update
Seita.2G287100.1 No alias histone *(H2A) 0.09 Orthogroups_2024-Update
Seita.3G063000.1 No alias histone *(H2A) 0.07 Orthogroups_2024-Update
Seita.5G370600.1 No alias histone *(H2A) 0.09 Orthogroups_2024-Update
Seita.5G370700.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Seita.9G450000.1 No alias histone *(H2A) 0.04 Orthogroups_2024-Update
Sobic.001G416800.1 No alias histone *(H2A) 0.05 Orthogroups_2024-Update
Sopen01g042970 No alias Core histone H2A/H2B/H3/H4 0.12 Orthogroups_2024-Update
Sopen03g001250 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen06g035820 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen09g005140 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen09g029130 No alias Core histone H2A/H2B/H3/H4 0.13 Orthogroups_2024-Update
Sopen09g031570 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen10g002510 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen11g030880 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen11g030890 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
evm.model.contig_533.4 No alias (p16866|h2a4_volca : 182.0) Histone H2A-IV - Volvox... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003689 DNA clamp loader activity IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
MF GO:0004003 ATP-dependent DNA helicase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005663 DNA replication factor C complex IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008026 ATP-dependent helicase activity IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033170 protein-DNA loading ATPase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0042623 ATPase activity, coupled IEP Predicted GO
MF GO:0043138 3'-5' DNA helicase activity IEP Predicted GO
MF GO:0043140 ATP-dependent 3'-5' DNA helicase activity IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070035 purine NTP-dependent helicase activity IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 99 132
IPR007125 Histone_H2A/H2B/H3 17 96
No external refs found!