Solyc09g075430


Description : Ribosomal protein L19 (AHRD V3.3 *** K4CVC0_SOLLC)


Gene families : OG_42_0001643 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001643_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g075430
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
271656 No alias Ribosomal protein L19e family protein 0.07 Orthogroups_2024-Update
A4A49_20584 No alias 60s ribosomal protein l19-2 0.03 Orthogroups_2024-Update
A4A49_58465 No alias 60s ribosomal protein l19-2 0.08 Orthogroups_2024-Update
At3g16780 No alias 60S ribosomal protein L19-2... 0.04 Orthogroups_2024-Update
Bradi1g17920 No alias Ribosomal protein L19e family protein 0.09 Orthogroups_2024-Update
Bradi1g63010 No alias Ribosomal protein L19e family protein 0.1 Orthogroups_2024-Update
Brara.H03109.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.I00133.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.I05560.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Brara.J00128.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Cre02.g075700 No alias Ribosomal protein L19e family protein 0.14 Orthogroups_2024-Update
GRMZM2G116135 No alias Ribosomal protein L19e family protein 0.04 Orthogroups_2024-Update
Glyma.02G016000 No alias Ribosomal protein L19e family protein 0.04 Orthogroups_2024-Update
Glyma.03G211000 No alias Ribosomal protein L19e family protein 0.06 Orthogroups_2024-Update
Glyma.03G216600 No alias Ribosomal protein L19e family protein 0.03 Orthogroups_2024-Update
Glyma.10G016400 No alias Ribosomal protein L19e family protein 0.03 Orthogroups_2024-Update
Glyma.19G208200 No alias Ribosomal protein L19e family protein 0.05 Orthogroups_2024-Update
HORVU2Hr1G018700.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
HORVU4Hr1G049670.2 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Kfl00915_0030 kfl00915_0030_v1.1 (at1g02780 : 290.0) embryo defective 2386 (emb2386);... 0.04 Orthogroups_2024-Update
MA_1839g0010 No alias (at1g02780 : 287.0) embryo defective 2386 (emb2386);... 0.06 Orthogroups_2024-Update
MA_22977g0010 No alias (at1g02780 : 282.0) embryo defective 2386 (emb2386);... 0.06 Orthogroups_2024-Update
Mp7g09050.1 No alias component RPL19 of LSU proteome component 0.11 Orthogroups_2024-Update
PSME_00044681-RA No alias (at3g16780 : 285.0) Ribosomal protein L19e family... 0.04 Orthogroups_2024-Update
Potri.012G037500 No alias Ribosomal protein L19e family protein 0.05 Orthogroups_2024-Update
Pp1s121_144V6 No alias 60s ribosomal protein 0.15 Orthogroups_2024-Update
Pp1s144_37V6 No alias ribosomal protein l19 0.13 Orthogroups_2024-Update
Pp1s235_118V6 No alias 60s ribosomal protein 0.12 Orthogroups_2024-Update
Pp1s302_25V6 No alias ribosomal protein l19 0.03 Orthogroups_2024-Update
Pp1s3_375V6 No alias 60s ribosomal protein l19-3 0.14 Orthogroups_2024-Update
Pp1s50_102V6 No alias 60s ribosomal protein l19-3 0.11 Orthogroups_2024-Update
Pp1s83_173V6 No alias 60s ribosomal protein 0.04 Orthogroups_2024-Update
Pp1s83_174V6 No alias 60s ribosomal protein 0.03 Orthogroups_2024-Update
Seita.4G043900.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Sobic.003G196800.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Sobic.004G045300.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Sobic.010G069400.1 No alias component *(eL19) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Sopen06g003980 No alias Ribosomal protein L19e 0.1 Orthogroups_2024-Update
Sopen09g030210 No alias Ribosomal protein L19e 0.09 Orthogroups_2024-Update
evm.model.contig_735.3 No alias (at3g16780 : 205.0) Ribosomal protein L19e family... 0.08 Orthogroups_2024-Update
evm.model.tig00021181.1 No alias (at1g02780 : 206.0) embryo defective 2386 (emb2386);... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
BP GO:0007005 mitochondrion organization IEP Predicted GO
BP GO:0007006 mitochondrial membrane organization IEP Predicted GO
BP GO:0007008 outer mitochondrial membrane organization IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0016272 prefoldin complex IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0045040 protein import into mitochondrial outer membrane IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000196 Ribosomal_L19/L19e 4 146
No external refs found!