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  5. Cre11.g480950

Cre11.g480950


Description : high mobility group B3


Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre11.g480950
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
A4A49_15500 No alias high mobility group b protein 7 0.02 Orthogroups_2024-Update
Brara.B03718.1 No alias DNA bending architectural protein *(HMG-B) 0.03 Orthogroups_2024-Update
Brara.I00619.1 No alias DNA bending architectural protein *(HMG-B) 0.02 Orthogroups_2024-Update
GRMZM5G834758 No alias high mobility group B3 0.02 Orthogroups_2024-Update
Glyma.10G288300 No alias high-mobility group box 6 0.03 Orthogroups_2024-Update
Kfl00271_0080 kfl00271_0080_v1.1 (at5g23420 : 89.4) Encodes HMGB6, a protein belonging to... 0.01 Orthogroups_2024-Update
MA_86565g0010 No alias (at5g23420 : 100.0) Encodes HMGB6, a protein belonging... 0.04 Orthogroups_2024-Update
Potri.010G189900 No alias high mobility group B1 0.02 Orthogroups_2024-Update
Pp1s106_177V6 No alias dna-binding protein 0.01 Orthogroups_2024-Update
Sobic.004G285900.3 No alias DNA bending architectural protein *(HMG-B) 0.01 Orthogroups_2024-Update
Sobic.007G000500.1 No alias DNA bending architectural protein *(HMG-B) 0.03 Orthogroups_2024-Update
Solyc02g082700 No alias High mobility group protein (AHRD V3.3 *** O49948_SOLTU) 0.01 Orthogroups_2024-Update
Solyc04g008820 No alias High mobility group protein (AHRD V3.3 *-* O49948_SOLTU) 0.03 Orthogroups_2024-Update
Sopen02g027450 No alias HMG (high mobility group) box 0.02 Orthogroups_2024-Update
Sopen03g005980 No alias HMG (high mobility group) box 0.02 Orthogroups_2024-Update
Sopen04g004000 No alias HMG (high mobility group) box 0.02 Orthogroups_2024-Update
evm.model.tig00000663.58 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00001339.6 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0009395 phospholipid catabolic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 79 146
No external refs found!