1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre11.g482483

Cre11.g482483


Description : RNA helicase, ATP-dependent, SK12/DOB1 protein


Gene families : OG_42_0001297 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre11.g482483
Cluster HCCA clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
At2g06990 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.02 Orthogroups_2024-Update
At3g46960 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.01 Orthogroups_2024-Update
Bradi3g04550 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Orthogroups_2024-Update
Glyma.08G361900 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Orthogroups_2024-Update
Glyma.18G067400 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.01 Orthogroups_2024-Update
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 Orthogroups_2024-Update
Seita.1G080100.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.02 Orthogroups_2024-Update
Sobic.004G048800.1 No alias RNA helicase component *(SKI2) of SUPERKILLER regulation complex 0.03 Orthogroups_2024-Update
Sopen06g001970 No alias DSHCT (NUC185) domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048523 negative regulation of cellular process IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 982 1073
IPR025696 rRNA_proc-arch_dom 1243 1327
IPR012961 Ski2_C 1354 1525
IPR011545 DEAD/DEAH_box_helicase_dom 475 619
No external refs found!