1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre12.g508050

Cre12.g508050


Description : auxin response factor 17


Gene families : OG_42_0001716 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001716_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre12.g508050
Cluster HCCA clusters: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
A4A49_20189 No alias high mobility group b protein 15 0.02 Orthogroups_2024-Update
Brara.G03406.1 No alias DNA bending architectural protein *(HMG-B) 0.02 Orthogroups_2024-Update
PSME_00008954-RA No alias (at1g04880 : 182.0) HMG (high mobility group) box... 0.01 Orthogroups_2024-Update
Seita.1G158700.1 No alias DNA bending architectural protein *(HMG-B) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
MF GO:0031418 L-ascorbic acid binding IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
MF GO:0048029 monosaccharide binding IEP Predicted GO
BP GO:0051259 protein complex oligomerization IEP Predicted GO
BP GO:0051260 protein homooligomerization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001606 ARID_dom 1475 1568
IPR022702 Cytosine_MeTrfase1_RFD 22 142
IPR028942 WHIM1_dom 549 590
No external refs found!