Cre12.g508150

Description : chromatin-remodeling protein 11

Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Chlamydomonas release: Cre12.g508150
Cluster	HCCA clusters: Cluster_123

Target	Alias	Description	ECC score	Gene Family Method
102849	No alias	Homeotic gene regulator	0.03	Orthogroups_2024-Update
155996	No alias	chromatin remodeling factor CHD3 (PICKLE)	0.03	Orthogroups_2024-Update
440815	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
AC235535.1_FG001	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
At3g06400	No alias	Chromatin-remodeling complex ATPase...	0.03	Orthogroups_2024-Update
At5g19310	No alias	Probable ATP-dependent DNA helicase CHR23...	0.01	Orthogroups_2024-Update
At5g66750	No alias	ATP-dependent DNA helicase DDM1...	0.02	Orthogroups_2024-Update
Bradi1g18910	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Bradi1g26940	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Bradi1g44177	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
GRMZM2G097289	No alias	Homeotic gene regulator	0.02	Orthogroups_2024-Update
GRMZM2G316191	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Glyma.05G131500	No alias	chromatin remodeling 4	0.02	Orthogroups_2024-Update
Glyma.13G215900	No alias	chromatin-remodeling protein 11	0.02	Orthogroups_2024-Update
HORVU7Hr1G041450.33	No alias	SMARCA component *(SYD/BRM/MINU)	0.01	Orthogroups_2024-Update
LOC_Os03g01200	No alias	SNF2 family N-terminal domain containing protein, expressed	0.02	Orthogroups_2024-Update
Mp2g26680.1	No alias	CHD3-type chromatin-remodeling factor PICKLE...	0.03	Orthogroups_2024-Update
Mp4g00040.1	No alias	chromatin remodeling factor (Chd3/Mi-2)	0.03	Orthogroups_2024-Update
Mp8g17660.1	No alias	chromatin remodeling factor (Snf2)	0.02	Orthogroups_2024-Update
PSME_00005765-RA	No alias	(q7g8y3\|isw2_orysa : 1630.0) Probable chromatin...	0.02	Orthogroups_2024-Update
PSME_00006567-RA	No alias	(at5g44800 : 1157.0) chromatin remodeling 4 (CHR4);...	0.01	Orthogroups_2024-Update
Potri.009G047800	No alias	chromatin remodeling 5	0.02	Orthogroups_2024-Update
Potri.014G056700	No alias	SNF2 domain-containing protein / helicase...	0.02	Orthogroups_2024-Update
Seita.2G419600.1	No alias	component *(CHR5) of SAGA transcription co-activator...	0.02	Orthogroups_2024-Update
Seita.4G050000.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.01	Orthogroups_2024-Update
Sobic.002G308700.1	No alias	CHD3-type chromatin remodeling factor *(PKL/PKR)	0.02	Orthogroups_2024-Update
Sobic.010G105200.1	No alias	SMARCA component *(SYD/BRM/MINU)	0.02	Orthogroups_2024-Update
Solyc02g062780	No alias	chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)	0.02	Orthogroups_2024-Update
Solyc06g054560	No alias	RNA helicase DEAH-box19	0.02	Orthogroups_2024-Update
Sopen06g019630	No alias	SNF2 family N-terminal domain	0.03	Orthogroups_2024-Update
evm.model.tig00000802.67	No alias	(at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type...	0.02	Orthogroups_2024-Update
evm.model.tig00020960.24	No alias	(at2g13370 : 202.0) chromatin remodeling 5 (CHR5);...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	InterProScan predictions
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Predicted GO
MF	GO:0004057	arginyltransferase activity	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005643	nuclear pore	IEP	Predicted GO
BP	GO:0006405	RNA export from nucleus	IEP	Predicted GO
BP	GO:0006406	mRNA export from nucleus	IEP	Predicted GO
BP	GO:0006810	transport	IEP	Predicted GO
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predicted GO
BP	GO:0016598	protein arginylation	IEP	Predicted GO
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Predicted GO
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Predicted GO
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
CC	GO:0030117	membrane coat	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0046907	intracellular transport	IEP	Predicted GO
BP	GO:0050657	nucleic acid transport	IEP	Predicted GO
BP	GO:0050658	RNA transport	IEP	Predicted GO
BP	GO:0051028	mRNA transport	IEP	Predicted GO
BP	GO:0051168	nuclear export	IEP	Predicted GO
BP	GO:0051169	nuclear transport	IEP	Predicted GO
BP	GO:0051179	localization	IEP	Predicted GO
BP	GO:0051234	establishment of localization	IEP	Predicted GO
BP	GO:0051236	establishment of RNA localization	IEP	Predicted GO
BP	GO:0051641	cellular localization	IEP	Predicted GO
BP	GO:0051649	establishment of localization in cell	IEP	Predicted GO
BP	GO:0071702	organic substance transport	IEP	Predicted GO
BP	GO:0071705	nitrogen compound transport	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR015194	ISWI_HAND-dom	747	845
IPR001650	Helicase_C	480	592
IPR015195	SLIDE	902	1012
IPR000330	SNF2_N	187	457

External Links

No external refs found!

Cre12.g508150

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation