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  5. Solyc09g082450

Solyc09g082450


Description : Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HUS7_POPTR)


Gene families : OG_42_0011246 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011246_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g082450
Cluster HCCA clusters: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Potri.010G083700 No alias Function unknown 0.05 Orthogroups_2024-Update
Sopen09g031310 No alias PPR repeat family 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004618 phosphoglycerate kinase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 298 327
IPR002885 Pentatricopeptide_repeat 98 123
IPR002885 Pentatricopeptide_repeat 267 296
IPR002885 Pentatricopeptide_repeat 504 531
IPR002885 Pentatricopeptide_repeat 553 613
IPR032867 DYW_dom 703 826
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 398 428
IPR002885 Pentatricopeptide_repeat 429 474
No external refs found!