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  5. Cre12.g520150

Cre12.g520150


Description : RNA helicase family protein


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre12.g520150
Cluster HCCA clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
A4A49_11921 No alias putative pre-mrna-splicing factor atp-dependent rna... 0.01 Orthogroups_2024-Update
At1g26370 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 Orthogroups_2024-Update
At2g35340 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Orthogroups_2024-Update
GRMZM2G305060 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
LOC_Os02g50370 No alias helicase domain-containing protein, putative, expressed 0.01 Orthogroups_2024-Update
Potri.015G008700 No alias RNA helicase family protein 0.01 Orthogroups_2024-Update
Sobic.003G124600.1 No alias RNA helicase *(Prp2) 0.02 Orthogroups_2024-Update
evm.model.contig_2494.11 No alias (at3g62310 : 436.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
evm.model.contig_3392.5 No alias (at1g26370 : 321.0) RNA helicase family protein;... 0.01 Orthogroups_2024-Update
evm.model.tig00000796.23 No alias (at3g26560 : 485.0) ATP-dependent RNA helicase,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 437 557
IPR001650 Helicase_C 241 372
IPR011545 DEAD/DEAH_box_helicase_dom 22 197
IPR011709 DUF1605 722 807
No external refs found!