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  5. Solyc09g082540

Solyc09g082540


Description : Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT1G04190.1)


Gene families : OG_42_0004653 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004653_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g082540
Cluster HCCA clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
At1g04190 No alias TPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178WLS7] 0.02 Orthogroups_2024-Update
HORVU5Hr1G013240.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU5Hr1G013250.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008378 galactosyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016149 translation release factor activity, codon specific IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR011990 TPR-like_helical_dom_sf 16 54
No external refs found!