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  5. Cre12.g537671

Cre12.g537671


Description : chromatin remodeling 4


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre12.g537671
Cluster HCCA clusters: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
155996 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
A4A49_03849 No alias protein chromatin remodeling 4 0.03 Orthogroups_2024-Update
A4A49_34446 No alias chromatin structure-remodeling complex protein syd 0.02 Orthogroups_2024-Update
AC235535.1_FG001 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
At2g25170 No alias chromatin remodeling factor CHD3 (PICKLE)... 0.02 Orthogroups_2024-Update
At2g28290 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
At3g06400 No alias Chromatin-remodeling complex ATPase... 0.04 Orthogroups_2024-Update
Bradi1g18910 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Bradi1g26940 No alias chromatin remodeling 4 0.03 Orthogroups_2024-Update
Bradi1g44177 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
Bradi1g47367 No alias chromatin remodeling factor CHD3 (PICKLE) 0.04 Orthogroups_2024-Update
Bradi2g35740 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
GRMZM2G316191 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Glyma.02G281000 No alias chromatin remodeling 5 0.03 Orthogroups_2024-Update
Glyma.05G131500 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
Glyma.06G063400 No alias chromatin remodeling factor CHD3 (PICKLE) 0.02 Orthogroups_2024-Update
Glyma.14G033600 No alias chromatin remodeling 5 0.04 Orthogroups_2024-Update
MA_10429361g0010 No alias (at2g13370 : 1371.0) chromatin remodeling 5 (CHR5);... 0.01 Orthogroups_2024-Update
Mp2g26680.1 No alias CHD3-type chromatin-remodeling factor PICKLE... 0.02 Orthogroups_2024-Update
Mp4g00040.1 No alias chromatin remodeling factor (Chd3/Mi-2) 0.02 Orthogroups_2024-Update
Potri.010G019800 No alias chromatin-remodeling protein 11 0.02 Orthogroups_2024-Update
Pp1s123_125V6 No alias snf2 super family 0.02 Orthogroups_2024-Update
Seita.2G320900.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Seita.3G058900.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Seita.4G050000.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.02 Orthogroups_2024-Update
Seita.4G112400.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Sobic.002G308700.1 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) 0.03 Orthogroups_2024-Update
Sobic.003G163200.1 No alias ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 Orthogroups_2024-Update
Sobic.010G105200.1 No alias SMARCA component *(SYD/BRM/MINU) 0.02 Orthogroups_2024-Update
Sopen01g029280 No alias SNF2 family N-terminal domain 0.02 Orthogroups_2024-Update
evm.model.tig00000217.25 No alias (at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in... 0.02 Orthogroups_2024-Update
evm.model.tig00020960.24 No alias (at2g13370 : 202.0) chromatin remodeling 5 (CHR5);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 925 1239
IPR001650 Helicase_C 1315 1441
IPR000313 PWWP_dom 323 374
IPR011124 Znf_CW 67 111
No external refs found!