1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre12.g553100

Cre12.g553100


Description : varicose-related


Gene families : OG_42_0001770 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001770_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre12.g553100
Cluster HCCA clusters: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G016800 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU7Hr1G045250.3 No alias Unknown function 0.01 Orthogroups_2024-Update
MA_10431534g0030 No alias (at3g13300 : 338.0) Encodes VCS (VARICOSE). Involved... 0.02 Orthogroups_2024-Update
Mp3g11710.1 No alias scaffold component VCS of mRNA decapping complex 0.01 Orthogroups_2024-Update
Pp1s132_74V6 No alias No description available 0.01 Orthogroups_2024-Update
Sobic.004G256500.1 No alias scaffold component *(VCS) of mRNA decapping complex 0.02 Orthogroups_2024-Update
Sopen07g010040 No alias hypothetical protein 0.01 Orthogroups_2024-Update
evm.model.tig00001038.27 No alias (at3g13290 : 87.8) varicose-related (VCR); FUNCTIONS IN:... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006302 double-strand break repair IEP Predicted GO
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0032947 protein-containing complex scaffold activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 120 204
No external refs found!