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  5. Cre13.g602850

Cre13.g602850


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Chlamydomonas release: Cre13.g602850
Cluster HCCA clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
At3g23830 No alias GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35] 0.02 Orthogroups_2024-Update
At3g26420 No alias Glycine-rich RNA-binding protein RZ1A... 0.02 Orthogroups_2024-Update
Bradi4g00940 No alias cold, circadian rhythm, and RNA binding 1 0.02 Orthogroups_2024-Update
GRMZM2G077797 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.10G106200 No alias Ribosomal protein L18ae/LX family protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G073330.9 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G073220.1 No alias RNA editing factor *(ORRM2) 0.02 Orthogroups_2024-Update
MA_10428777g0010 No alias (p49310|grp1_sinal : 115.0) Glycine-rich RNA-binding... 0.01 Orthogroups_2024-Update
Sobic.002G058700.2 No alias RNA chaperone *(RZ1) 0.01 Orthogroups_2024-Update
evm.model.contig_2015.16 No alias (q08937|roc2_nicsy : 89.4) 29 kDa ribonucleoprotein B,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0010011 auxin binding IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Predicted GO
MF GO:0042562 hormone binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 136 205
No external refs found!