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  5. Solyc09g090410

Solyc09g090410


Description : 50S ribosomal protein L28, chloroplastic (AHRD V3.3 *** RK28_TOBAC)


Gene families : OG_42_0007957 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007957_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g090410
Cluster HCCA clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
A4A49_16586 No alias 50s ribosomal protein l28, chloroplastic 0.06 Orthogroups_2024-Update
Bradi2g40040 No alias Ribosomal L28 family 0.03 Orthogroups_2024-Update
Brara.D02034.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Cre06.g265800 No alias Ribosomal L28 family 0.08 Orthogroups_2024-Update
GRMZM2G038833 No alias Ribosomal L28 family 0.03 Orthogroups_2024-Update
GRMZM2G042061 No alias Ribosomal L28 family 0.04 Orthogroups_2024-Update
Glyma.10G002600 No alias Ribosomal L28 family 0.05 Orthogroups_2024-Update
Kfl00690_0100 kfl00690_0100_v1.1 (p30956|rk28_tobac : 93.6) 50S ribosomal protein L28,... 0.02 Orthogroups_2024-Update
MA_10426581g0010 No alias (at2g33450 : 140.0) Ribosomal L28 family; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
Mp4g05120.1 No alias component psRPL28 of large ribosomal subunit proteome 0.02 Orthogroups_2024-Update
Potri.010G068500 No alias Ribosomal L28 family 0.06 Orthogroups_2024-Update
Pp1s229_21V6 No alias ribosomal protein l28 0.05 Orthogroups_2024-Update
Seita.9G244200.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Sobic.001G240000.1 No alias component *(bL28c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Sopen09g033320 No alias Ribosomal L28 family 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004645 phosphorylase activity IEP Predicted GO
MF GO:0004813 alanine-tRNA ligase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006419 alanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008184 glycogen phosphorylase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
CC GO:0009317 acetyl-CoA carboxylase complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016149 translation release factor activity, codon specific IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 74 132
No external refs found!