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  5. Solyc09g097910

Solyc09g097910


Description : 30S ribosomal protein S1 (AHRD V3.3 *** W9RML0_9ROSA)


Gene families : OG_42_0008367 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008367_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc09g097910
Cluster HCCA clusters: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Bradi1g01880 No alias Nucleic acid-binding proteins superfamily 0.04 Orthogroups_2024-Update
Cre03.g148950 No alias Nucleic acid-binding proteins superfamily 0.03 Orthogroups_2024-Update
GRMZM2G016084 No alias Nucleic acid-binding proteins superfamily 0.04 Orthogroups_2024-Update
Glyma.11G252900 No alias Nucleic acid-binding proteins superfamily 0.04 Orthogroups_2024-Update
Glyma.18G004100 No alias Nucleic acid-binding proteins superfamily 0.05 Orthogroups_2024-Update
LOC_Os03g62780 No alias S1 RNA binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
Pp1s269_70V6 No alias rna binding s1 domain protein 0.02 Orthogroups_2024-Update
Seita.9G014000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen09g035850 No alias S1 RNA binding domain 0.17 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0042126 nitrate metabolic process IEP Predicted GO
BP GO:0042128 nitrate assimilation IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
MF GO:0098809 nitrite reductase activity IEP Predicted GO
BP GO:2001057 reactive nitrogen species metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003029 S1_domain 190 268
No external refs found!