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  5. MA_10020g0010

MA_10020g0010


Description : (at1g26770 : 369.0) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A10 (EXPA10); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.2); Has 2216 Blast hits to 2213 proteins in 165 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 52; Plants - 2112; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). & (p93442|expa4_orysa : 328.0) Expansin-A4 precursor (OsEXPA4) (Alpha-expansin-4) (OsEXP4) (OsaEXPa1.22) - Oryza sativa (Rice) & (reliability: 738.0) & (original description: no original description)


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_10020g0010
Cluster HCCA clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
231226 No alias expansin A9 0.02 Orthogroups_2024-Update
91129 No alias expansin A15 0.02 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.03 Orthogroups_2024-Update
Glyma.19G024200 No alias expansin A15 0.03 Orthogroups_2024-Update
Mp3g03890.1 No alias alpha-class expansin 0.05 Orthogroups_2024-Update
Mp4g22180.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
PSME_00039952-RA No alias (at5g05290 : 224.0) Encodes an expansin. Naming... 0.06 Orthogroups_2024-Update
Pp1s75_153V6 No alias alpha-expansin 15 0.03 Orthogroups_2024-Update
Pp1s9_119V6 No alias alpha-expansin 15 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 59 144
IPR007117 Expansin_CBD 155 232
No external refs found!