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  5. MA_100287g0010

MA_100287g0010


Description : (at3g12770 : 646.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor 22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 114.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1292.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_100287g0010
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_38131 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi1g20737 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g68870 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
PSME_00002349-RA No alias (at3g12770 : 612.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00004170-RA No alias (at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00005130-RA No alias (at4g33990 : 552.0) embryo defective 2758 (EMB2758);... 0.04 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00005903-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00006511-RA No alias (at1g11290 : 568.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00007652-RA No alias (at1g11290 : 614.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00007759-RA No alias (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00008064-RA No alias (at3g49170 : 637.0) embryo defective 2261 (EMB2261);... 0.06 Orthogroups_2024-Update
PSME_00008509-RA No alias (at1g11290 : 604.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00008750-RA No alias (at1g15510 : 464.0) Encodes a pentatricopeptide repeat... 0.05 Orthogroups_2024-Update
PSME_00010400-RA No alias (at4g02750 : 490.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00010401-RA No alias (at4g18750 : 645.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00011508-RA No alias (at2g27610 : 744.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00011574-RA No alias (at1g16480 : 646.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00012885-RA No alias (at1g08070 : 603.0) Encodes a chloroplast RNA editing... 0.05 Orthogroups_2024-Update
PSME_00015835-RA No alias (at4g01030 : 610.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00016653-RA No alias (at3g02010 : 685.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
PSME_00016831-RA No alias (at3g12770 : 618.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
PSME_00016832-RA No alias (at4g18750 : 587.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00017380-RA No alias (at2g27610 : 683.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00022741-RA No alias (at4g18750 : 598.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00025365-RA No alias (at3g49170 : 602.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
PSME_00028519-RA No alias (at2g22070 : 606.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00030552-RA No alias (at4g18750 : 502.0) Encodes a pentatricopeptide (PPR)... 0.06 Orthogroups_2024-Update
PSME_00032004-RA No alias (at1g19720 : 530.0) Pentatricopeptide repeat (PPR-like)... 0.04 Orthogroups_2024-Update
PSME_00033965-RA No alias (at2g27610 : 573.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00034005-RA No alias (at3g23330 : 585.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00035769-RA No alias (at4g13650 : 702.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00038145-RA No alias (at5g52630 : 598.0) Encodes a member of the DYW... 0.03 Orthogroups_2024-Update
PSME_00038705-RA No alias (at3g23330 : 523.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00039409-RA No alias (at4g18750 : 537.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00039410-RA No alias (at2g13600 : 502.0) Pentatricopeptide repeat (PPR)... 0.07 Orthogroups_2024-Update
PSME_00039504-RA No alias (at4g13650 : 612.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.06 Orthogroups_2024-Update
PSME_00052953-RA No alias (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056168-RA No alias (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00056663-RA No alias (at3g13770 : 545.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00057046-RA No alias (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00057114-RA No alias (at4g21300 : 528.0) Tetratricopeptide repeat (TPR)-like... 0.07 Orthogroups_2024-Update
Pp1s169_110V6 No alias T12J13.14; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G172500.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 346 393
IPR002885 Pentatricopeptide_repeat 142 189
IPR002885 Pentatricopeptide_repeat 446 494
IPR032867 DYW_dom 620 744
IPR002885 Pentatricopeptide_repeat 522 546
IPR002885 Pentatricopeptide_repeat 245 270
IPR002885 Pentatricopeptide_repeat 218 242
IPR002885 Pentatricopeptide_repeat 591 616
No external refs found!