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  5. MA_100669g0010

MA_100669g0010


Description : (at3g08020 : 115.0) PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT3G52100.1); Has 2616 Blast hits to 2466 proteins in 178 species: Archae - 0; Bacteria - 13; Metazoa - 2009; Fungi - 82; Plants - 239; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description)


Gene families : OG_42_0003408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003408_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Picea release: MA_100669g0010
Cluster HCCA clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Sopen01g034370 No alias hypothetical protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!