Solyc01g094970

Description : Pectin lyase-like superfamily protein (AHRD V3.3 *** AT3G61490.4)

Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g094970
Cluster	HCCA clusters: Cluster_244

Target	Alias	Description	ECC score	Gene Family Method
A4A49_18383	No alias	putative polygalacturonase	0.03	Orthogroups_2024-Update
Brara.E02481.1	No alias	EC_3.2 glycosylase	0.03	Orthogroups_2024-Update
Brara.F02946.1	No alias	EC_3.2 glycosylase	0.02	Orthogroups_2024-Update
Glyma.03G216800	No alias	Pectin lyase-like superfamily protein	0.05	Orthogroups_2024-Update
Glyma.10G016100	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
LOC_Os09g26800	No alias	polygalacturonase, putative, expressed	0.02	Orthogroups_2024-Update
Potri.006G139500	No alias	Pectin lyase-like superfamily protein	0.03	Orthogroups_2024-Update
Sobic.003G223100.1	No alias	EC_3.2 glycosylase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	InterProScan predictions
BP	GO:0005975	carbohydrate metabolic process	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Predicted GO
BP	GO:0006397	mRNA processing	IEP	Predicted GO
BP	GO:0010215	cellulose microfibril organization	IEP	Predicted GO
BP	GO:0016049	cell growth	IEP	Predicted GO
MF	GO:0016778	diphosphotransferase activity	IEP	Predicted GO
BP	GO:0030198	extracellular matrix organization	IEP	Predicted GO
CC	GO:0031225	anchored component of membrane	IEP	Predicted GO
BP	GO:0040007	growth	IEP	Predicted GO
BP	GO:0043062	extracellular structure organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	147	427

External Links

No external refs found!