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  5. Solyc10g006480

Solyc10g006480


Description : Polyubiquitin (AHRD V3.3 *** UBI1P_NICSY)


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Solyc10g006480
Cluster HCCA clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Bradi4g28550 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Brara.A02946.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
Glyma.15G259200 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Potri.007G067500 No alias related to ubiquitin 1 0.03 Orthogroups_2024-Update
Solyc06g053210 No alias Ubiquitin (AHRD V3.3 *** J7G5B5_ROSRU) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 155 226
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 383 454
IPR000626 Ubiquitin_dom 307 378
No external refs found!