Description : (at4g13650 : 527.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 179.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1054.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Picea release: MA_10293513g0010 | |
Cluster | HCCA clusters: Cluster_43 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
114611 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
A4A49_25971 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
A4A49_38131 | No alias | pentatricopeptide repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
At3g63370 | No alias | Pentatricopeptide repeat-containing protein At3g63370,... | 0.02 | Orthogroups_2024-Update | |
Bradi1g03670 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi1g20230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi5g14000 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.G01460.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
GRMZM2G380195 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G462417 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.13G313300 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G056450.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g41120 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os12g36620 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_168311g0010 | No alias | (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
MA_175688g0010 | No alias | (at3g23330 : 531.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
Sobic.008G147400.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc11g017290 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.02 | Orthogroups_2024-Update | |
Sopen11g024580 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
CC | GO:0005739 | mitochondrion | IEP | Predicted GO |
BP | GO:0006952 | defense response | IEP | Predicted GO |
CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 647 | 671 |
IPR002885 | Pentatricopeptide_repeat | 182 | 206 |
IPR002885 | Pentatricopeptide_repeat | 547 | 572 |
IPR002885 | Pentatricopeptide_repeat | 446 | 469 |
IPR002885 | Pentatricopeptide_repeat | 210 | 239 |
IPR002885 | Pentatricopeptide_repeat | 241 | 266 |
IPR002885 | Pentatricopeptide_repeat | 107 | 153 |
IPR002885 | Pentatricopeptide_repeat | 371 | 418 |
IPR002885 | Pentatricopeptide_repeat | 472 | 520 |
IPR002885 | Pentatricopeptide_repeat | 573 | 621 |
IPR002885 | Pentatricopeptide_repeat | 269 | 318 |
IPR002885 | Pentatricopeptide_repeat | 332 | 370 |
No external refs found! |